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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128085143_128103874_F

Intron Information:

Intron Rank:
125916
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
128085143 - 128103874
Intron Length:
18732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
GGACACACTGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTGTTTGGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
44.5
-0.3
1.7
40.5
38.8
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
55.4
0.16
1.6
69.96
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017835
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033588
128081082 - 128105338
24257