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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128085143_128104119_F

Intron Information:

Intron Rank:
125920
Intron Class:
major
Intron Phase:
Intron Coordinates:
128085143 - 128104119
Intron Length:
18977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
GCTTGCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAA
U12 Branch Point Sequence:
TTGCTATCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
66.7
0.42
1.1
69.7
35.6
Major PPT
74.3
0.55
0.9
65
41.2
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
45.8
-0.2
2
66.51
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017835
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047109
128081082 - 128105338
24257