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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12813136_12816123_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12813136 - 12816123
Intron Length:
2988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
VRTDKRFFLKHHGKIKKTNF
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
74.9
34.9
Major BPS
79.4
0.73
1
80.1
32
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
31
-2.2
3.6
46.5
48.8
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
ORC5
Ensembl Gene ID:
ENSAPLG00000002905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024455
12770816 - 12839172
68357
ENSAPLT00000002989
12770816 - 12839172
68357