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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128202377_128206772_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
128202377 - 128206772
Intron Length:
4396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
TTCTTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACCTTATAT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
71.3
35.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88.4
0.86
0.8
83.2
32
Minor 5ss
26.6
-2.7
3
31.2
42.7
Minor BPS
67.5
0.63
1.7
86.45
39

Associated Gene:

Gene:
TLR7
Ensembl Gene ID:
ENSAPLG00000004139
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004233
128202224 - 128215041
12818