About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128229952_128231034_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
128229952 - 128231034

Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAACTATA

5'SS Class:
strong_major

3'SS Sequence:
TCTTTTGAAATAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TATTCAT

U12 Branch Point Sequence:
CTCTTTTGAAAT

Flanking Amino Acid:
TMDLHASQIQGFFDIPVDNL

Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
85.4
0.83
1.1
87.1
30

Major BPS
92.2
1.05
0.7
91.9
19.6

Major PPT
68.7
0.42
1
66.4
38.7

Minor 5ss
44.9
-0.6
2.6
60
44.4

Minor BPS
53.9
0.2
1.6
69.04
42.2

Associated Gene:

Gene:
PRPS2

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

128223013 - 128248604
25592