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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128231134_128234597_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128231134 - 128234597
Intron Length:
3464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
CTTTATTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTCTTTATTT
Flanking Amino Acid:
KDKKGAVERWSRAPISAKLV
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
76.2
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.6
0.8
0.7
84.1
30.4
Minor 5ss
38.5
-1.3
3.1
45.5
42.9
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
PRPS2
Ensembl Gene ID:
ENSAPLG00000004141
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004272
128223013 - 128248604
25592