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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12826084_12827173_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12826084 - 12827173
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TACTTTTTATTT
Flanking Amino Acid:
LPAFLRLQELTARNVTVVLL
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.8
0.71
0.7
77.3
24.7
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
58.6
0.35
1.5
71.82
40.2

Associated Gene:

Gene:
ORC5
Ensembl Gene ID:
ENSAPLG00000002905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024455
12770816 - 12839172
68357
ENSAPLT00000002989
12770816 - 12839172
68357