Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12827249_12831018_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12827249 - 12831018

Intron Length:

3770

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGTAAT

5'SS Class:

major

3'SS Sequence:

ATTTTGTTAAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATCAT

U12 Branch Point Sequence:

ATTTTGTTAAAA

Flanking Amino Acid:

QDLQDETFYIVLDRAEQLRE

Intron Amino Acid Position:

135

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

81.8

Major BPS

79.4

0.73

80.1

Major PPT

66.8

0.38

1.2

68.5

40.8

Minor 5ss

-1.1

2.9

57.3

41.2

Minor BPS

58.5

0.26

2.1

74.59

36.8

Associated Gene:

Gene:

ORC5

Ensembl Gene ID:

ENSAPLG00000002905

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024455

12770816 - 12839172

68357

ENSAPLT00000002989

12770816 - 12839172

68357