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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128303408_128304554_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
128303408 - 128304554
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
CCTTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATGCCTTTTATT
Flanking Amino Acid:
QTQKISLKYIEKEWGLETFL
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
68.7
39.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.8
0.81
0.8
80.8
29.6
Minor 5ss
40.8
-1
2.8
45.7
43.5
Minor BPS
56.3
0.28
1.6
71.26
40.4

Associated Gene:

Gene:
FRMPD4
Ensembl Gene ID:
ENSAPLG00000004467
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004579
128289989 - 128597283
307295