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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128307530_128310664_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128307530 - 128310664
Intron Length:
3135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTAG
5'SS Class:
major
3'SS Sequence:
CTTTGTTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CCTTTGTTAATT
Flanking Amino Acid:
FRFDCSTSIKDVILTLQEKL
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.8
42.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
70.4
0.46
1
71.1
38.7
Minor 5ss
41.8
-0.9
3.2
54.5
49.7
Minor BPS
57.7
0.32
2.1
74.4
43.5

Associated Gene:

Gene:
FRMPD4
Ensembl Gene ID:
ENSAPLG00000004467
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004579
128289989 - 128597283
307295