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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12835970_12837346_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12835970 - 12837346
Intron Length:
1377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTGCTT
5'SS Class:
major
3'SS Sequence:
TCCTCCCACCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TTCCTCCCACCT
Flanking Amino Acid:
VSMLLSIFGERQQLSFPSIF
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
66.2
44.9
Major BPS
50
0
1.2
61.8
35.9
Major PPT
65.9
0.36
0.8
58.5
32
Minor 5ss
35.4
-1.7
3.8
55.9
48.3
Minor BPS
44.2
-0.3
2.1
65.92
44.5

Associated Gene:

Gene:
ORC5
Ensembl Gene ID:
ENSAPLG00000002905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024455
12770816 - 12839172
68357
ENSAPLT00000002989
12770816 - 12839172
68357