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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128361301_128409977_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
128361301 - 128409977
Intron Length:
48677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTTATTT
Flanking Amino Acid:
ANRDGRDYFINHMTQSATFE
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
69.9
41.1
Major BPS
100
1.24
0.5
100
0
Major PPT
88
0.86
0.7
83.8
30.9
Minor 5ss
33.8
-1.8
3.2
40.5
39.9
Minor BPS
64.2
0.52
1.5
78.46
39

Associated Gene:

Gene:
FRMPD4
Ensembl Gene ID:
ENSAPLG00000004467
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004579
128289989 - 128597283
307295