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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12837531_12838766_R

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
5UTR
Intron Coordinates:
12837531 - 12838766
Intron Length:
1236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCCATT
5'SS Class:
weak_minor
3'SS Sequence:
CTTTGTTTTCCAG|A
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGATAATTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
74.4
41.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
88.1
0.86
0.8
80.3
37.3
Minor 5ss
74.3
0.82
1.9
83.7
34.7
Minor BPS
51.1
0.03
1.9
65.43
39.6

Associated Gene:

Gene:
ORC5
Ensembl Gene ID:
ENSAPLG00000002905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024455
12770816 - 12839172
68357