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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1283979_1284561_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1283979 - 1284561
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
CGATTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTTACCTGAGCT
Flanking Amino Acid:
VFGAAPLENVVRKYKSMILE
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.5
37
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
68.8
0.42
0.9
61.5
34.8
Minor 5ss
36
-1.6
3.6
48.3
42.5
Minor BPS
65.5
0.56
1.8
86.31
39.1

Associated Gene:

Gene:
NRF1
Ensembl Gene ID:
ENSAPLG00000003164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042267
1268512 - 1289780
21269
ENSAPLT00000003275
1266696 - 1289780
23085
ENSAPLT00000047126
1267098 - 1289780
22683