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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128605977_128615016_F

Intron Information:

Intron Rank:
150442
Intron Class:
major
Intron Phase:
Intron Coordinates:
128605977 - 128615016
Intron Length:
9040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTTACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80
0.67
0.8
71
34.5
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
63.9
0.42
1.9
77.37
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037875
128605442 - 128615843
10402