Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1286714_1289557_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1286714 - 1289557

Intron Length:

2844

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGCCC

5'SS Class:

major

3'SS Sequence:

GTTTGATTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

CATTCACTGATT

Flanking Amino Acid:

DEVTAHLAAAGPVGMAAAAA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

1.2

62.2

41.1

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

79.8

0.67

0.9

70.1

44.9

Minor 5ss

37.6

-1.4

3.3

51.7

Minor BPS

49.1

0.01

1.9

69.98

Associated Gene:

Gene:

NRF1

Ensembl Gene ID:

ENSAPLG00000003164

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042267

1268512 - 1289780

21269

ENSAPLT00000003275

1266696 - 1289780

23085

ENSAPLT00000047126

1267098 - 1289780

22683