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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128721099_128721512_R

Intron Information:

Intron Rank:
147949
Intron Class:
major
Intron Phase:
Intron Coordinates:
128721099 - 128721512
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAAATA
5'SS Class:
major
3'SS Sequence:
GTTCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACGAA
U12 Branch Point Sequence:
TTCTCTTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1
70.4
35.3
Major BPS
52.8
0.07
1.3
52.8
42.7
Major PPT
86
0.81
0.8
79.9
32.1
Minor 5ss
29.9
-2.3
3.2
39.8
45.8
Minor BPS
56.8
0.07
1.8
63.96
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026888
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046914
128720239 - 128722462
2224