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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128721582_128722030_R

Intron Information:

Intron Rank:
147950
Intron Class:
major
Intron Phase:
Intron Coordinates:
128721582 - 128722030
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTAATACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTTTCCTTATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
68.9
0.43
0.9
59.7
41.2
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
62.2
0.36
2
73.85
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026888
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046914
128720239 - 128722462
2224