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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128737286_128737671_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
128737286 - 128737671
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAACTGC
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
YGSQHLLRMFVKLPEILGKM
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
59.2
40.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
43.7
-0.7
3
56
43.7
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
MSL3
Ensembl Gene ID:
ENSAPLG00000009050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048261
128732332 - 128746889
14558
ENSAPLT00000017597
128727320 - 128746889
19570
ENSAPLT00000009440
128727281 - 128746889
19609