About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128737772_128737949_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128737772 - 128737949
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GATTTCATAACC
Flanking Amino Acid:
EGRRNNELNEVLSWKLMPEN
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
100
1.24
0.5
100
0
Major PPT
82.1
0.72
0.9
82.1
34.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
65.3
0.46
1.6
73.38
36.7

Associated Gene:

Gene:
MSL3
Ensembl Gene ID:
ENSAPLG00000009050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048261
128732332 - 128746889
14558
ENSAPLT00000017597
128727320 - 128746889
19570
ENSAPLT00000009440
128727281 - 128746889
19609