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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128738706_128739164_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
128738706 - 128739164
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTGCCTTTATTT
Flanking Amino Acid:
PIKENSTNTNRNQEELSPSP
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
69.7
43.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79.7
0.67
0.8
73.1
37
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
54.9
0.23
1.6
68.58
43.2

Associated Gene:

Gene:
MSL3
Ensembl Gene ID:
ENSAPLG00000009050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009440
128727281 - 128746889
19609
ENSAPLT00000048261
128732332 - 128746889
14558
ENSAPLT00000017597
128727320 - 128746889
19570