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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128739324_128741238_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
128739324 - 128741238
Intron Length:
1915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AAATTCATAATC
Flanking Amino Acid:
MNIHYVPPEKNVELCKEMVD
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.6
0.73
0.7
78.1
23.8
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
56.9
0.2
1.6
63.74
35.1

Associated Gene:

Gene:
MSL3
Ensembl Gene ID:
ENSAPLG00000009050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048261
128732332 - 128746889
14558
ENSAPLT00000017597
128727320 - 128746889
19570
ENSAPLT00000009440
128727281 - 128746889
19609