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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128741400_128741820_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128741400 - 128741820
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGAAAT
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATTTCTATAAGA
Flanking Amino Acid:
DCYYINRRKRLVKLPCQTNI
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
73.4
37.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
90.3
0.91
0.7
88.4
28.7
Minor 5ss
40.8
-1
2.9
49.3
46.7
Minor BPS
59.5
0.29
1.9
74.53
37

Associated Gene:

Gene:
MSL3
Ensembl Gene ID:
ENSAPLG00000009050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048261
128732332 - 128746889
14558
ENSAPLT00000017597
128727320 - 128746889
19570
ENSAPLT00000009440
128727281 - 128746889
19609