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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128743765_128744363_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
128743765 - 128744363
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATCCTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTAAGTGAACC
Flanking Amino Acid:
RKLARKAVARMRRKGRKKRR
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
82.8
29.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.9
0.65
0.8
73.7
31.2
Minor 5ss
37.6
-1.4
3.1
54.1
43
Minor BPS
48
-0.1
2.3
69.43
41.4

Associated Gene:

Gene:
MSL3
Ensembl Gene ID:
ENSAPLG00000009050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048261
128732332 - 128746889
14558
ENSAPLT00000017597
128727320 - 128746889
19570
ENSAPLT00000009440
128727281 - 128746889
19609