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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128744460_128745022_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
128744460 - 128745022
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TACCAATCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TCTCCTTTTACC
Flanking Amino Acid:
YLIHFNGWNRSWDRWAAEDH
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
62.6
0.28
0.9
59.1
36.5
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
63.4
0.4
1.6
72
39.3

Associated Gene:

Gene:
MSL3
Ensembl Gene ID:
ENSAPLG00000009050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048261
128732332 - 128746889
14558
ENSAPLT00000017597
128727320 - 128746889
19570
ENSAPLT00000009440
128727281 - 128746889
19609