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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128777711_128780289_R

Intron Information:

Intron Rank:
135981
Intron Class:
major
Intron Phase:
Intron Coordinates:
128777711 - 128780289
Intron Length:
2579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGACAG
5'SS Class:
major
3'SS Sequence:
TTTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
60.3
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.3
1
0.6
93.4
22.5
Minor 5ss
32
-2.1
3
37.9
47
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041383
128774850 - 128780906
6057
ENSAPLT00000044282
128777311 - 128780906
3596