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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12888667_12890733_F

Intron Information:

Intron Rank:
143522
Intron Class:
major
Intron Phase:
Intron Coordinates:
12888667 - 12890733
Intron Length:
2067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TGCTCCTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
76.1
0.59
0.7
69.2
31.4
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
73.5
0.82
1.6
85.19
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024077
12888628 - 12892334
3707