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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12890874_12891520_F

Intron Information:

Intron Rank:
143523
Intron Class:
major
Intron Phase:
Intron Coordinates:
12890874 - 12891520
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCGATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
CACTCATGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.3
39
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
72.6
0.51
1
62.2
43.2
Minor 5ss
31.2
-2.2
3.3
40.2
45.7
Minor BPS
56
0.27
1.8
71.44
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024077
12888628 - 12892334
3707