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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12904518_12999275_F

Intron Information:

Intron Rank:
133805
Intron Class:
major
Intron Phase:
Intron Coordinates:
12904518 - 12999275
Intron Length:
94758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TGCTCTTCAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
84.7
0.78
0.7
76.7
32
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
52.6
0.08
1.9
63.91
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021945
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031069
12903532 - 13000171
96640