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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129047652_129066104_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129047652 - 129066104
Intron Length:
18453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
DLGCQIAIPKDGQKRKKSLR
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
89.2
0.88
0.6
83.8
24.5
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
ARHGAP6
Ensembl Gene ID:
ENSAPLG00000008489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022265
128787259 - 129105970
318712
ENSAPLT00000022204
128946901 - 129078905
132005
ENSAPLT00000008828
128787259 - 129105970
318712