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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129074684_129078638_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129074684 - 129078638
Intron Length:
3955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
GTGTATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTGTATTTTACA
Flanking Amino Acid:
PEPAPRARRRGAMSVDSITD
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
79.2
0.66
1
72.4
42.2
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
52.3
0.06
1.8
64.8
41.3

Associated Gene:

Gene:
ARHGAP6
Ensembl Gene ID:
ENSAPLG00000008489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008828
128787259 - 129105970
318712
ENSAPLT00000022265
128787259 - 129105970
318712
ENSAPLT00000022204
128946901 - 129078905
132005