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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129101797_129104087_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129101797 - 129104087
Intron Length:
2291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATCCT
5'SS Class:
major
3'SS Sequence:
TCTTCCTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTCTTCCTATTC
Flanking Amino Acid:
ENSSASQAGKDVSEDHFDIW
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
70.4
39.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
83
0.74
0.8
81.4
29.4
Minor 5ss
42.3
-0.9
2.9
59.8
44.7
Minor BPS
50.1
-0
1.9
66.11
40.2

Associated Gene:

Gene:
ARHGAP6
Ensembl Gene ID:
ENSAPLG00000008489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008828
128787259 - 129105970
318712