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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129437703_129441176_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129437703 - 129441176
Intron Length:
3474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATAG
Flanking Amino Acid:
FLQTAKNITERVSMATASSQ
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
82.5
0.73
0.7
77.5
29.8
Minor 5ss
32.2
-2
3
39.4
46.1
Minor BPS
56
0.05
2
70.21
42.4

Associated Gene:

Gene:
MID1
Ensembl Gene ID:
ENSAPLG00000007693
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032156
129227117 - 129461210
234094
ENSAPLT00000008017
129367669 - 129461227
93559