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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129441305_129456482_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129441305 - 129456482
Intron Length:
15178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGAAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
TTGGTTTGAAAT
Flanking Amino Acid:
KLLECLDYLTGLCNSADSWM
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
75
0.56
1
67.5
42.4
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
50.4
0.09
1.6
69.15
42.1

Associated Gene:

Gene:
MID1
Ensembl Gene ID:
ENSAPLG00000007693
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008017
129367669 - 129461227
93559