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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129501988_129503591_R

Intron Information:

Intron Rank:
149747
Intron Class:
major
Intron Phase:
Intron Coordinates:
129501988 - 129503591
Intron Length:
1604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TCTCTGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
AGTTCATTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
73.9
0.59
1
81
30.2
Major PPT
77
0.61
0.8
68.8
37.2
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
52.2
0.15
2
74.13
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028117
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027451
129501120 - 129503973
2854