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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129550993_129560413_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129550993 - 129560413
Intron Length:
9421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATGTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTCCATGTCACA
Flanking Amino Acid:
GLRQCLVTRSGYSTFYLN*
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.1
38.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
73.7
0.53
0.9
67.6
37.5
Minor 5ss
29.2
-2.4
2.5
25
36.7
Minor BPS
41.3
-0.6
2.4
57.02
42.6

Associated Gene:

Gene:
CLCN4
Ensembl Gene ID:
ENSAPLG00000007108
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027388
129550968 - 129587490
36523