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Intron Name: Anas_platyrhynchos_platyrhynchos_1_129558888_129560413_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

129558888 - 129560413

Intron Length:

1526

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAC

U12 Branch Point Sequence:

TGATTGTTGACC

Flanking Amino Acid:

GLRQCLVTRSGRLLGIITKK

Intron Amino Acid Position:

735

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

74.1

38.4

Major BPS

71.3

0.53

1.1

63.1

44.5

Major PPT

85.2

0.79

0.6

78.4

30.4

Minor 5ss

29.2

-2.4

2.5

36.7

Minor BPS

0.08

2.1

66.64

39.2

Associated Gene:

Gene:

CLCN4

Ensembl Gene ID:

ENSAPLG00000007108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022882

129557797 - 129587656

29860

ENSAPLT00000007398

129558797 - 129600698

41902