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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129569192_129571684_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129569192 - 129571684
Intron Length:
2493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATTTTATTC
Flanking Amino Acid:
VITIFTFGMKIPSGLFIPSM
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.6
0.55
1.1
73
41
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
53.5
0.09
1.6
63.41
36.5

Associated Gene:

Gene:
CLCN4
Ensembl Gene ID:
ENSAPLG00000007108
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027388
129550968 - 129587490
36523
ENSAPLT00000022882
129557797 - 129587656
29860
ENSAPLT00000007398
129558797 - 129600698
41902