Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129575187_129580816_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

129575187 - 129580816

Intron Length:

5630

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGGAAG

5'SS Class:

strong_major

3'SS Sequence:

GTTATTTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAC

U12 Branch Point Sequence:

ATTTGTCTAACA

Flanking Amino Acid:

WSELLVNQSEGASAYILNYF

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

71.3

40.1

Major BPS

71.4

0.53

1.2

63.4

Major PPT

81.1

0.7

0.9

73.6

41.7

Minor 5ss

37.7

-1.4

3.1

47.3

48.3

Minor BPS

56.1

0.19

2.1

74.29

37.4

Associated Gene:

Gene:

CLCN4

Ensembl Gene ID:

ENSAPLG00000007108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027388

129550968 - 129587490

36523

ENSAPLT00000022882

129557797 - 129587656

29860

ENSAPLT00000007398

129558797 - 129600698

41902