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Intron Name: Anas_platyrhynchos_platyrhynchos_1_129581005_129586904_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

129581005 - 129586904

Intron Length:

5900

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTTAT

U12 Branch Point Sequence:

TTTTTCTGCATT

Flanking Amino Acid:

VVMLLIGLLAGTLAGVIDLA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

77.9

36.9

Major BPS

67.4

0.43

1.1

57.4

41.4

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

42.4

-0.8

3.1

57.3

47.4

Minor BPS

60.4

0.41

1.9

84.15

Associated Gene:

Gene:

CLCN4

Ensembl Gene ID:

ENSAPLG00000007108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022882

129557797 - 129587656

29860

ENSAPLT00000007398

129558797 - 129600698

41902

ENSAPLT00000027388

129550968 - 129587490

36523