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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129587005_129587338_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129587005 - 129587338
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
TGTATTATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATCTCTCTAAAT
Flanking Amino Acid:
KSRDTDRHRKITSKSKESIW
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
35.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.4
0.66
0.9
70.5
44.3
Minor 5ss
28.9
-2.4
3.5
38.8
46.5
Minor BPS
58.3
0.34
1.8
76.32
40.1

Associated Gene:

Gene:
CLCN4
Ensembl Gene ID:
ENSAPLG00000007108
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027388
129550968 - 129587490
36523
ENSAPLT00000022882
129557797 - 129587656
29860
ENSAPLT00000007398
129558797 - 129600698
41902