About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129602630_129603888_R


Intron Information:

Intron Rank:
23

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
129602630 - 129603888

Intron Length:
1259

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAT|GTATGACAT

5'SS Class:
major

3'SS Sequence:
TATACCTACACAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTAAT

U12 Branch Point Sequence:
ATTTTTCTAATT

Flanking Amino Acid:
INIPPLPADDRGAQHKTNFA

Intron Amino Acid Position:
1092

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.1
0.5
1.1
66.3
38.9

Major BPS
94.5
1.11
0.6
92.2
14.6

Major PPT
68.4
0.41
1
61.9
38.6

Minor 5ss
42.1
-0.9
3.2
61
43.7

Minor BPS
64.8
0.54
1.6
82.33
32.9

Associated Gene:

Gene:
WWC3

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

129602573 - 129700692
98120