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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129641696_129647474_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129641696 - 129647474
Intron Length:
5779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
GEKERQELMQSLAKLTDGFR
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.1
0.7
0.7
76.7
25.3
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
WWC3
Ensembl Gene ID:
ENSAPLG00000006132
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006415
129602573 - 129700692
98120
ENSAPLT00000034430
129603083 - 129700692
97610