About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129663510_129700590_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
129663510 - 129700590
Intron Length:
37081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTGTATTTACAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
51.9
0.14
1.9
73.84
43

Associated Gene:

Gene:
WWC3
Ensembl Gene ID:
ENSAPLG00000006132
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034430
129603083 - 129700692
97610
ENSAPLT00000006415
129602573 - 129700692
98120