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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129715114_129723953_R

Intron Information:

Intron Rank:
131654
Intron Class:
major
Intron Phase:
Intron Coordinates:
129715114 - 129723953
Intron Length:
8840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAGACCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
100
1.24
0.5
100
0
Major PPT
80.5
0.69
0.8
72.9
37.3
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
60.2
0.4
1.7
73.78
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018020
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045051
129713732 - 129724197
10466