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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129752908_129754200_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129752908 - 129754200
Intron Length:
1293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGGAGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTACACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
IVFDILANYLTINEKMLFHP
Intron Amino Acid Position:
1710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.1
59.4
41.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.2
0.84
0.8
84.3
29.6
Minor 5ss
27.5
-2.6
3
27
37.6
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
SHROOM2
Ensembl Gene ID:
ENSAPLG00000029599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026770
129752855 - 129878259
125405