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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129754319_129760465_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129754319 - 129760465
Intron Length:
6147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAAAG
5'SS Class:
major
3'SS Sequence:
CTTTTCCCCTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGAATTTAAACT
Flanking Amino Acid:
LDENTSPEERRTLVEKQKLL
Intron Amino Acid Position:
1671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.7
39.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
71.8
0.49
1
76.1
26.5
Minor 5ss
26.9
-2.6
2.7
23.2
36.9
Minor BPS
53.2
0.18
1.7
69.69
41.3

Associated Gene:

Gene:
SHROOM2
Ensembl Gene ID:
ENSAPLG00000029599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040267
129754052 - 129859968
105917
ENSAPLT00000027510
129754052 - 129878259
124208
ENSAPLT00000026770
129752855 - 129878259
125405