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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129765643_129766529_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129765643 - 129766529
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GACTTTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GACTTTTTACCA
Flanking Amino Acid:
KVPSPKISEEKKEEQNAPSA
Intron Amino Acid Position:
1519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
73.2
0.52
1
66.2
43.8
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
53.7
0.11
1.6
60.19
40.2

Associated Gene:

Gene:
SHROOM2
Ensembl Gene ID:
ENSAPLG00000029599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027510
129754052 - 129878259
124208
ENSAPLT00000026770
129752855 - 129878259
125405
ENSAPLT00000040267
129754052 - 129859968
105917