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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129767082_129771065_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129767082 - 129771065
Intron Length:
3984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAGAC
5'SS Class:
major
3'SS Sequence:
TCCTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CATTTCTAAATA
Flanking Amino Acid:
PVSVQDENPARIERVIDNNT
Intron Amino Acid Position:
1335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
62.5
36.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
87.1
0.83
0.7
79.7
32.2
Minor 5ss
29.7
-2.3
3.5
41.5
45.2
Minor BPS
60.2
0.32
1.7
67.46
39.7

Associated Gene:

Gene:
SHROOM2
Ensembl Gene ID:
ENSAPLG00000029599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040267
129754052 - 129859968
105917
ENSAPLT00000027510
129754052 - 129878259
124208
ENSAPLT00000026770
129752855 - 129878259
125405