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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129771825_129790162_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129771825 - 129790162
Intron Length:
18338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TGCTAATGATGT
Flanking Amino Acid:
NNLDDKNHAVRQADIGALRE
Intron Amino Acid Position:
1082

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
76.8
0.67
1
66
40.9
Major PPT
79.7
0.67
0.7
73.6
31.4
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
38.6
-0.7
2.1
55.9
45.5

Associated Gene:

Gene:
SHROOM2
Ensembl Gene ID:
ENSAPLG00000029599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040267
129754052 - 129859968
105917
ENSAPLT00000027510
129754052 - 129878259
124208
ENSAPLT00000026770
129752855 - 129878259
125405